B Reproducible reports with R markdown

This chapter will introduce you to creating reproducible reports using R markdown to encourage best (or better) practice to facilitate open science. It will first describe what R markdown is and why you might want to consider using it, describe how to create an R markdown document using RStudio and then how to convert this document to a html or pdf formatted report. During this Chapter you will learn about the different components of an R markdown document, how to format text, graphics and tables within the document and finally how to avoid some of the common difficulties using R markdown.